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GWAS-related eQTLs across different cancer types

We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).



e.g., "STAD"
e.g., "r²>= 0.8"
e.g., "rs2273"
Cancer type
eQTL type
tagSNP
LD
SNP ID
SNP position (hg19)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-value
GWAS-Traits
THYM cis rs10935120 1 rs3846055 chr3:134203973 ANAPC13 chr3:134196547-134204865:- 0.57 7.8 7.93E-12 Height
THYM cis rs10935120 1 rs3846055 chr3:134203973 CEP63 chr3:134204575-134293852:+ 0.39 5.71 1.31E-7 Height
THYM cis rs10935120 1 rs3846056 chr3:134227292 ANAPC13 chr3:134196547-134204865:- 0.58 8.01 2.88E-12 Height
THYM cis rs10935120 1 rs3846056 chr3:134227292 CEP63 chr3:134204575-134293852:+ 0.41 6.04 2.93E-8 Height
THYM cis rs9457247 1 rs385113 chr6:167403971 RNASET2 chr6:167343008-167412795:- -0.47 -7.83 7.0E-12 Crohn's disease
THYM cis rs9457247 1 rs385863 chr6:167386615 RNASET2 chr6:167343008-167412795:- -0.47 -7.83 7.0E-12 Crohn's disease
THYM cis rs9457247 1 rs386548 chr6:167385533 RNASET2 chr6:167343008-167412795:- 0.45 7.46 4.07E-11 Crohn's disease
THYM cis rs2243480 1 rs387676 chr7:65598220 CCT6P1 chr7:65216092-65228661:+ 0.64 5.31 7.1E-7 Diabetic kidney disease
THYM cis rs2243480 1 rs3885839 chr7:65290403 CCT6P1 chr7:65216092-65228661:+ 0.68 5.01 2.55E-6 Diabetic kidney disease
THYM cis rs9815354 1 rs3890604 chr3:41760625 ULK4 chr3:41288091-42003660:- 1.03 11.64 5.41E-20 Diastolic blood pressure
THYM cis rs9457247 1 rs389946 chr6:167407268 RNASET2 chr6:167343008-167412795:- -0.47 -7.83 7.0E-12 Crohn's disease
THYM cis rs9457247 1 rs389956 chr6:167407254 RNASET2 chr6:167343008-167412795:- -0.47 -7.83 7.0E-12 Crohn's disease
THYM cis rs10935120 1 rs3932818 chr3:134206069 ANAPC13 chr3:134196547-134204865:- 0.57 7.72 1.16E-11 Height
THYM cis rs10935120 1 rs3932818 chr3:134206069 CEP63 chr3:134204575-134293852:+ 0.41 5.95 4.4E-8 Height
THYM cis rs9815354 1 rs3934103 chr3:41977214 ULK4 chr3:41288091-42003660:- -0.99 -10.55 1.1E-17 Diastolic blood pressure